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db4DNASeq: An object-oriented DNA database model associated with sequence search method


Keng, Hoong Ng and Kyuk, Wei Shoo and Wei, Liam Diong and Amnuaisuk, Somnuk Phon and Chin, Kuan Ho (2008) db4DNASeq: An object-oriented DNA database model associated with sequence search method. In: Knowledge Management International Conference 2008 (KMICe2008), 10-12 June 2008, Langkawi, Malaysia.

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Abstract

DNA database consists of many nucleotide sequences, it is not only supporting typical database queries, but it also needs to facilitate sequence search and alignment. In this paper, we present an object-oriented nucleotide database which is designed not only for the convenience of executing normal database operations such as insertion, modification or data querying in a fast manner, but it also supports a fast search method on database sequences with reasonable tradeoff between time and memory usage.

Item Type: Conference or Workshop Item (Paper)
Additional Information: ISBN 978-983-3827-73-2 Organized by: College of Arts and Sciences, Universiti Utara Malaysia
Uncontrolled Keywords: Object Database,sequence search, database query, Db4o, hash table
Subjects: T Technology > TK Electrical engineering. Electronics Nuclear engineering
Divisions: College of Arts and Sciences
Depositing User: Mrs. Norazmilah Yaakub
Date Deposited: 20 Aug 2014 01:32
Last Modified: 20 Aug 2014 01:32
URI: http://repo.uum.edu.my/id/eprint/11393

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